1. Invited Talks and Presentations
  2. Conference Proceedings
  3. Poster Presentations

1. INVITED TALKS & PRESENTATIONS


17.  

 

  

 

S. U. Chaudhary*, Mahnoor Naseer Gondal, Hira Anees Awan, Osama Shiraz Shah, Waleed Ahmed, Abdul Rehman, Ammar Arif, Zainab Arshad, Muhammad Faizyab Ali Chaudhary, Muhammad Ahmad, Bibi Amina, Hadia Hameed, Salaar Khan, Risham Hussain, Huma Khawar, Sameer Ahmed, Fayyaz Ahmed, Omer Ishaq, Waqar Nabi, Wim Vanderbauwhede, Muhammad Tariq and Amir Faisal, “Computational Cancer Systems Biology: The New Frontiers”, International Conference of Punjab University on Recent Innovations in Molecular Sciences, The University of Punjab, Nov. 2019, Lahore, Pakistan.

16.

 

S. U. Chaudhary*, “An Excursion into Biomedical Informatics Research at LUMS”, Department of Computer Sciences, Lahore University of Management Sciences, Oct. 2019, Lahore, Pakistan.

15.

 

F. Ahmad, B. Talib, S. U. Chaudhary*, "Perception of Difficulty Using Functional Magnetic Resonance Imaging Data", 11th International Conference on Computer and Automation Engineering, pp. 37-40, Feb. 2019, Perth, Australia.

14.

 

S. U. Chaudhary*, “Recent Trends in Computational Proteomics”, International Conference on Advancements in Biotechnology and Biocomputing, International Islamic University, Feb. 2019, Islamabad, Pakistan.

13.

 

S. U. Chaudhary*, “Investigating the Cross-talk between Cardiovascular Disorders and Diabetes Mellitus”, Shalamar Medical and Dental College, Jan. 2019, Lahore, Pakistan.

12.

S. U. Chaudhary*, “Growing and Analyzing Tumors in silico”, 15th BURAQ Space Camp, Dec. 2018, Islamabad, Pakistan.

11.

 

S. U. Chaudhary*, “Surfing the Tides in Cancer Landscapes”, Bioinformatics Workshop, University of Central Punjab, Mar. 2018, Lahore, Pakistan.

10.

S. U. Chaudhary*, “Computers in Biology - Future of Medicine”, 14th BURAQ Space Camp, Dec. 2017, Islamabad, Pakistan.

9.

 

 

M. Abubakar, K. Altaf, M. Shaukat, W. Ahmed, D. Khan, S. U. Chaudhary*, “DIAGNIA: An End-to-end Scientific Wellness Backbone for Next-generation National Healthcare Paradigm in Pakistan”, DICE-2017, COMSATS Institute of Information Technology, Lahore, Pakistan.

* 2nd prize from amongst 100+ projects in the competition.

8.
 

 

A. R. Basharat, Z. Bibi, R. Hussain, H. G. Kabir, A. Shahid, M. Humayun, H. A. Hayat, M. Mustafa, M. A. Shoaib, Z. Ullah, S. Zarina, S. Ahmed, E. Uddin, S. Hamera,  F. Ahmad and S. U. Chaudhary*, "SPECTRUM: A MATLAB Toolbox for Identifying Proteins from Top-down Proteomics Data", Trends and Prospects in Molecular Biosciences, Punjab University, 2017, Lahore, Pakistan.

7.

 

S. U. Chaudhary*, "Next Generation Protein Identification and Quantitation Pipelines for Top-down Proteomics", International Conference on Biotechnology, Lahore Garrison University, 2017, Lahore, Pakistan.

6.

 

S. U. Chaudhary*, "Attractor Landscape Analysis for Application in Boolean Networks towards Personalized Therapeutics", Conference on Computational Biology and Genomics, Hazara University, 2017, Mansehra, Pakistan.

5.

 

S. U. Chaudhary*, "Mass Spectrometry based Proteomics and Systems Biology”, Bioinformatics Moot, Forman Christian College University, 2017, Lahore, Pakistan.

4.

 

S. U. Chaudhary*, “Identifying Proteins in High Resolution Top-down Proteomics”, Latest Trends in Domestic and Wild Animal Genomics and Biotechnology, Virtual University, 2016, Lahore, Pakistan.

3.

 

 

M. Abubakar, A. Bibi, R. Hussain, Z. Bibi, A. Gul, Z. Bashir, S. N. Arshad, M. A. Uppal, S. U. Chaudhary*, “Towards Providing Full Spectrum Antenatal Health Care in Low and Middle Income Countries”, 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016), Vol 5 (HEALTHINF), pp. 478-483, 2016, Rome, Italy.

2.

 

S. U. Chaudhary, “Mitochondria in the Warburg Effect”, 1st OXFORD-KAIST International Workshop on Cancer Modeling, 11th December, 2010, KAIST, Daejeon, South Korea.

1.

 

S. U. Chaudhary, “Mitochondrial Functioning and the Warburg Effect: A Systems Biology Approach to Understand the Tumor Initiation”, Workshop on Multi-scale Modeling of Cancer, 6th-8th  October, 2010, University of Oxford, Oxford, United Kingdom

 


2. CONFERENCE PROCEEDINGS


4.  

 

F. Ahmad, B. Talib, S. U. Chaudhary*, "Perception of Difficulty Using Functional Magnetic Resonance Imaging Data", Proceedings of 11th International Conference on Computer and Automation Engineering, pp. 37-40, Feb. 2019, Perth, Australia.

3.

 

 

M. Abubakar, A. Bibi, R. Hussain, Z. Bibi, A. Gul, Z. Bashir, S. N. Arshad, M. A. Uppal, S. U. Chaudhary*, “Towards Providing Full Spectrum Antenatal Health Care in Low and Middle Income Countries”, Proceedings of 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016), Vol 5 (HEALTHINF), pp. 478-483, 2016, Rome, Italy.

2.

 

 

U. Z. Ijaz, S. U. Chaudhary, M. S. Don, and K. Y. Kim, “Computational Strategies for Protein Quantitation in 2D Electrophoresis Gel Image Processor for MATLAB,” Proceedings of Frontiers in the Convergence of Bioscience and Information Technologies (IEEE CS Press), pp. 129-134, 2007, Jeju, South Korea.

1.

 

U. Z. Ijaz, S. U. Chaudhary, S. M. Ahn, B. H. Lee, K. Y. Kim, “2D Electrophoresis Gel Image Processor for MATLAB,” Proceedings of 2006 International Conference on Hybrid Information Technology (ICHIT 2006), Nov 9-11, 2006, Jeju, South Korea.

 


3. POSTER PRESENTATIONS


27.

 

H. Khawar, R. Hussain, M. N. Gondal, A. Faisal, S. U. Chaudhary*, "Investigating the Reversal of Pancreatic Tumorigenesis through Attractor Landscape Analysis and Targeted Therapy"Recent Innovations in Molecular Sciences, International Conference of Punjab University, Nov. 2019, Lahore, Pakistan.

26.

 

M. N. Gondal, O. S. Shah, R. Hussain, H. Khawar, A. Faisal, M. Tariq, S. U. Chaudhary*, "Multi-scale Modelling of Colorectal Tumorigenesis in Drosophila melanogaster Midgut"Recent Innovations in Molecular Sciences, International Conference of Punjab University, Nov. 2019, Lahore, Pakistan.

25.

 

R. Hussain, H. Khawar, M. N. Gondal, A. Faisal, S. U. Chaudhary*, "Deciphering the Regulatory Control of Pro-survival and Anti-survival Mechanisms of Autophagy and its Oncogenic Manipulation"Recent Innovations in Molecular Sciences, International Conference of Punjab University, Nov. 2019, Lahore, Pakistan.

24.  

S. U. Chaudhary*, "PERCEPTRON - An Open-source GPU Accelerated Proteoform Identification Pipeline for Top-Down Proteomics", 18th Annual Human Proteome Organization World Congress (HUPO), Sep. 2019, Adelaide, Australia.

23.

M. Abubakar, K. Altaf, M. Shaukat, W. Ahmed, D. Khan, S. U. Chaudhary*, “DIAGNIA: An End-to-end Scientific Wellness Backbone for Next-generation National Healthcare Paradigm in Pakistan”, DICE-2017, COMSATS Institute of Information Technology, Lahore, Pakistan.

* 2nd prize from amongst 100+ projects in the competition.

22.

S. U. Chaudhary*A. R. Basharat, O. S. Shah, "Computational Biology Workshop”, Computational Biology WorkshopHabib University, 2017, Karachi, Pakistan.

21.

S. U. Chaudhary*, “Laying the Foundations of Computational Proteomics in Pakistan”, International Conference on Biotechnology, (ICB): Challenges and opportunities in Pakistan, University of South Asia, 2017, Lahore, Pakistan.

20.

A. R. Basharat, Z. Bibi, R. Hussain, H. G. Kabir, A. Shahid, M. Humayun, H. A. Hayat, M. Mustafa, M. A. Shoaib, Z. Ullah, S. Zarina, S. Ahmed, E. Uddin, S. Hamera,  F. Ahmad and S. U. Chaudhary*, "SPECTRUM: A MATLAB Toolbox for Identifying Proteins from Top-down Proteomics Data", 16th Annual Human Proteome Organization World Congress (HUPO), 2017, Dublin, Ireland.
 

19.

M. F. Ali, H. A. Awan, H. Hameed, Z. Arshad, M. Abubakar, K. M. Hasan, B. Wajid, A. Faisal, S. U. Chaudhary*, “TISON - Theatre for in silico Oncology: A Next-Generation Multiscale Modelling Platform for Predicting Cancer Growth, Development and Metastasis”, DICE-2016, National University of Science and Technology (NUST), Islamabad, Pakistan.

* 2nd prize in "Biological Sciences, Medical Sciences and Vetinerary Sciences" category out of 85+ projects.

18.

 

Z. Bibi†, A. R. Basharat†, R. Hussain, B. Amina, H. G. Kabir, A. Shahid, M. Humayun, A. Riaz, H. A. Hayat, M. Mustafa, M. A. Shoaib, Z. Ullah, S. Zarina, S. Ahmed, E. Uddin, S. Hamera, F. Ahmad, S. U. Chaudhary*, "LUMSProT: A MATLAB Toolbox for Identifying Proteins from Top-down Proteomics Data", Biosymposium2016, Lahore University of Management Sciences, Lahore, Pakistan.

17.

N. Saeed, M. Salman, T. Shafi, M. U. Ashraf, H. Parveen, S. Hamera, S. S. Hussan, M. Shafiq, S. Raza, R. Qazi, S. A. Qureshi, S. U. Chaudhary*, “HCV IRES Cconserved Sub-domains III-d and III-f mediated Pan-genomic Therapeutics using Modified Oligomers”, Biosymposium2016, Lahore University of Management Sciences, Lahore, Pakistan.

16.

A. Farhan, B. B. Yunus, S. U. Chaudhary, F. Tariq, M. Umair, S. Mirza*, “Association of Type 2 Diabetes with Hepatitis C Virus infection in Pakistani Population”, Biosymposium2016, Lahore University of Management Sciences, Lahore, Pakistan.

15.

M. F. Ali, H. A. Awan, H. Hameed, Z. Arshad, M. Abubakar, K. M. Hasan, B. Wajid, A. Faisal, S. U. Chaudhary*, “TISON - Theatre for in silico Oncology: A Next-Generation Multiscale Modelling Platform for Predicting Cancer Growth, Development and Metastasis”, Biosymposium2016, Lahore University of Management Sciences, Lahore, Pakistan.

* Honorable mention in poster presentation competition

14.

T. Shafi, M. U. Ashraf, N. Saeed, M. Salman, H. Parveen, S. Hamera, S. S. Hussan, M. Shafiq, S. Raza, R. Qazi, S. A. Qureshi, S. U. Chaudhary*, “Optimization of HCV NS3 Protease Onhibitors for Pan-genotypic Activity using Rational Drug Design Approaches”, Biosymposium2016, Lahore University of Management Sciences, Lahore, Pakistan.

13.

O. S. Shah, M. Ahmed, S. Khalid, Amir Faisal, S. U. Chaudhary*, “BALSA: Toolbox for Attractor Landscape Analysis of Biomolecular Networks”, Biosymposium2016, Lahore University of Management Sciences, Lahore, Pakistan.

* Honorable mention in poster presentation competition

12.

M. Abubakar, A. Gul, Z. Bashir, S. N. Arshad, M. A. Uppal, S. U. Chaudhary*, “Diagnia – Improving Lives through Antenatal Care”, Biosymposium2016, Lahore University of Management Sciences, Lahore, Pakistan.

* Best poster prize in poster presentation competition

11.

B. Amina, I. Durrani, A. Riaz, A. Faisal, F. Ahmad, S.-Y. Shin, S. U. Chaudhary*, “A see-saw of fate: Investigating the Dynamics of Cytochrome-c and ATP in Tumorigenesis”, Biosymposium2016, Lahore University of Management Sciences, Lahore, Pakistan.

10.

N. Javaid, S. U. Chaudhary, M. Umair, Q. Sultana, S. Mirza*, “An Integrative Systems Biology and Epidemiological Study to Predict, Control and Manage Resistance in Invasive Infections”, Biosymposium2016, Lahore University of Management Sciences, Lahore, Pakistan.

 9.

Z.Bibi, M.Humanyun, S. U. Chaudhary*, “GPU-based High Performance PST Extractor for Mass Spectrometry Data”, 3rd National Computational Science Conference (NCSC), 2015, Islamabad, Pakistan.

* 2nd prize in poster presentation competition

 8.

M. Abubakar, A. H. Sahi, F. Azam, M. A. Shoaib, S. Bhatti, S. U. Chaudhary*, "eMumCare: Online Maternity Health Care", TechnoMoot, 2015, Abbotabad, Pakistan.

* 2nd prize in project presentation competition

 7.

R. Hussain, H. G. Kabir, S. U. Chaudhary*, “Towards an Accurate Measurement of Intact Protein Mass in High-Resolution Mass Spectrometry”, 3rd National Computational Science Conference (NCSC), 2015, Islamabad, Pakistan.

* 4th prize in poster presentation competition

 6. 

H. Amin, S. Fatima, M. Ali, S. U. Chaudhary, Z. Habib, "Smart Learning Advanced Tools for Education in Mathematics up to Grade 2", 11th International Conference on Frontiers in Information Technology (FIT), 2013, Islamabad, Pakistan.

* 1st prize in poster presentation competition

 5. S. U. Chaudhary, J. E. K. Sormark, J. K. Won, S. Y. Shin, K. H. Cho, “Multi-Scale Modeling and Game-Theoretic Analysis of Mitochondrial Process Elucidates the Hidden Mechanism of Warburg Effect in Tumorigenesis,” 11th International Conference on Systems Biology (ICSB), 2010, Edinburgh, United Kingdom.
 
 4. K. H. Kwon, S. U. Chaudhary, S. H. Kim , M. H. Hur , Y. S. Cho , H. S. Kim , and J. S. Yoo, “TDGen : Mass Spectrum Generator for the Top-Down Proteomics Research,” Korean Human Proteome Organization (KHUPO), 8th International Proteomics Conference, 2008, Jeju, South Korea.
 
 3. U. Z. Ijaz, S. U. Chaudhary, M. S. Don, and K. Y. Kim, “Computational Strategies for Protein Quantitation in 2D Electrophoresis Gel Image Processor for MATLAB,” Frontiers in the Convergence of Bioscience and Information Technologies, pp. 129-134, 2007, Jeju, South Korea. IEEE CS Press.
 
 2. K. H. Kwon,  S. U. Chaudhary,  M. H. Hur,  S. H. Kim,  H. S. Kim,  J. S. Yoo, “Database Search Analysis using Flipped Mass Spectrum in Top-down Proteomics,” Human Proteomics Organization 6th Annual World Congress (HUPO), 2007, Seoul, South Korea. 
 
 1. U. Z. Ijaz, S. U. Chaudhary, S. M. Ahn, B. H. Lee, K. Y. Kim, “2D Electrophoresis Gel Image Processor for MATLAB,” The 2006 International Conference on Hybrid Information Technology (ICHIT 2006), Nov 9-11, 2006, Jeju, South Korea.