26.

M. N. Gondal, A. Rehman, A Arif, M. U. Sultan, H. A. Awan, Z. Arshad, M. F. A. Chaudhary, W. Ahmed, R Hussain, H. Khawar, S. Khan, B. Amina, R. N. Butt, F. Abbas, M. N. Jami, R. Akbar, Z. Nasir, O. S. Shah, H. Hameed, M. F. A. Butt, M. M. Ahmad, M. A. Talal, S. Ahmed, F. Ahmed, O. Ishaq, S. W. Nabi, W. Vanderbauwhede, B. Wajid, H. Shehwana, E. Uddin, M. Safdar, I. Javed, M. Tariq, A. Faisal, and S. U. Chaudhary,* "TISON: a Next-generation Multi-scale Modeling Theatre for in silico Systems Oncology", (In Preparation)

25.

M. N. Gondal, R. N. Butt, O. S. Shah, Z. Nasir, H. Khawar, M. Tariq, A. Faisal, and S. U. Chaudhary*, "A Pharmacogenomics-based Approach to Design Personalized Therapeutics for Colorectal Tumorigenesis using an In silico Drosophila Patient Model". (In Preparation) 

Preprint: [BiorXiv]

24.

A. Sabir^¥, Z. Nasir^¥, Z. Khalida^¥, H. M. Salman, M. F. Khalid, M. B. Khalid, F. Arshad, K. Iman, M. U. Ashraf, A. Tahir, H. G. Ejaz, S. A., S. H. Liaqat, H. Khawar, R. Hussain, A. Rehman, N. Javaid, M. Saleem, S. N. Arshad, S. Mirza, N. Nisar, S. Sikander, Z. Ahmad, M. Abubakar, S. Hamera, A. Bashir, B. Wajid, M. Tariq, and S. U. Chaudhary*, "Profiling microbial and heavy metal contamination of Hudiara drain and its adjoining areas in Lahore, Pakistan". (In Preparation)

23.

22.

A. Z. Abbasi, M. Bilal, G. Khurshid, C. Yiotis, I. Zeb, J. Hussain, A. Baig, M. M. Shah, S. U. Chaudhary, B. Osborne*, R. Ahmad*, "Expression of Cyanobacterial Genes Enhanced CO2 Assimilation and Biomass Production in Transgenic Arabidopsis thaliana", PeerJ. (In Review)

21.

F. Ahmad, Z. Saghir, S. U. Chaudhary*, S. Bashir*, "Causality Mapping in Schizophrenia Patients using Resting-State fMRI Reveals Aberrant Functional and Causal Connectivity in the Brain". PLoS ONE. (In Review)

Preprint: [BiorXiv]

20.

M. F. Khalid, K. Iman, A. Ghafoor, A. R. Basharat, M. Saboor, U. Muaz, A. Ali, T. Tahir, W. Nabi, W. Vanderbauwhede, T. Mehmood, S. A. Qureshi, S. A. Chan, S. U. Chaudhary*, "PERCEPTRON - An Open-source GPU-Accelerated Proteoform Identification Pipeline for Top-Down Proteomics", Nucleic Acids Research. (In Review) 

19.

N. Javaid, Q. Sultana, K. Rasool, S. Gandra, F. Ahmad, S. U. Chaudhary*, S. Mirza*, "Trends in Antimicrobial Resistance Amongst Invasive Pathogens in Pakistan (2011-2015): A Retrospective Cross-Sectional Study", PLOS One. (In Review) 

Preprint: [ResearchSquare] 

18.

A. Ambreen, A. Khalid, S. Z. H. Naqvi, A. Tahir, M. Mustafa, S. U. Chaudhary, S. Mirza, T. Mustafa*, "Host Biomarkers for Monitoring Therapeutic Response in Extra-Pulmonary Tuberculosis", Cytokine.  (In Review) 

17.

A. Zeb, R. Ullah*, and S. U. Chaudhary, "Movies become Search Good: Distribution of Emotions in Online Movie Reviews", Electronic Commerce Research. (In Review) 

16.

M. Samar, A. A. Shami, H. Mukhtar, M. W. Mumtaz, A. Tahir, S. Shahzad-ul-Hussan, S. U. Chaudhary, M. T. Akhtar*, "1H-NMR-based metabolomics: An integrated approach of metabolite profiling for the detection of the adulteration in chicken, mutton, beef, and donkey meat", Foods. (In Review)

15.

A. Tahir^♰, P. J. Martinez^♰, F. Ahmad, S. P. Fisher-Hoch, S. Mirza*, S. U. Chaudhary*, "An Evaluation of Lipid Profile and Pro-inflammatory Cytokines as Determinants of Cardiovascular Disease in Diabetics", Scientific Reports - Nature, Vol. 11, Jan. 2021. [I.F. 4.0], [Link]

14.

M. U. Ashraf^♰, H. M. Salman^♰, M. F. Khalid, M. H. F. Khan, S. Anwar, S. Afzal, I. Khan, S. U. Chaudhary*, "CRISPR-Cas13a Mediated Targeting of Hepatitis C Virus Internal-Ribosomal Entry Site (IRES) as an Effective Antiviral Strategy", Biomedicine and Pharmacotherapy, Vol. 135, No. 111239, Apr. 2021. [I.F. 4.5], [Link]

13.

G. Khurshid, A. Z. Abbassi, M. F. Khalid, M. N. Gondal, T. A. Naqvi, M. M. Shah, S. U. Chaudhary*, R. Ahmad*, "An integrated model of cyanobacterial decarboxylation and C3 photosynthetic pathways to bypass photorespiration for enhancing photosynthesis", Scientific Reports - Nature, Vol. 10, No. 20879, Nov. 2020. [I.F. 4.0], [Link]

12. 

A. R. Basharat, K. Iman, Z. Bibi, R. Hussain, H. G. Kabir, A. Shahid, M. Humayun, H. A. Hayat, M. Mustafa, M. Shoaib, Z. Ullah, S. Zarina, S. Ahmed, E. Uddin, S. Hamera,  F. Ahmad, S. U. Chaudhary*, "SPECTRUM - A MATLAB Toolbox for Identifying Proteins from Top-down Proteomics Data", Scientific Reports - Nature, Vol. 9, No. 11267, Jun. 2019. [I.F. 4.1], [Link]

11.

M. U. Ashraf♱, K. Iman♱, M. F. Khalid, H. M. Salman, T. Shafi, M. Rafi, N. Javaid, R. Hussain, F. Ahmad, S. Shahzad-ul-Hussan, S. Mirza, M. Shafiq, S. Afzal, M. Idrees, S. Hamera, S. Anwar, R. Qazi, S. A. Qureshi, S. U. Chaudhary*, "Evolution of Efficacious Pan-Genotypic HCV Therapies", Medicinal Research Reviews, Vol. 39, Issue 3, pp. 1091-1136 , May 2019. [I.F. 9.8] [Link]

10.

A. Ahsan; A. Z. Khan; H. Javed; S. Mirza; S. U. Chaudhary, S. Shahzad-ul-Hussan*, "Estimation of hepatitis C prevalence in the Punjab province of Pakistan: A retrospective study on general population", PLOS One,  Apr. 2019. [I.F. 2.8] [Link]

9.

N. Nisar*, K. Cheema, G. Powell, M. Bennett, S. U. Chaudhary, R. Qadri, Y. Yang, M. Azam, J. Rossiter, "Reduced metabolites of nitroaromatics are distributed in the environment via the food chain", Journal of Hazardous Materials, Vol. 355, pp. 170-179 , Aug. 2018, [I.F. 7.6] [Link]

8.

O. S. Shah, M. F. A. Chaudhary, H. A. Awan, F. Fatima, Z. Arshad, A. Bibi, M. Ahmed, H. Hameed, M. Furqan, S. Khalid, A. Faisal, S. U. Chaudhary*, "ATLANTIS-Attractor Landscape Analysis Toolbox for Cell Fate Discovery & Reprogramming", Scientific Reports - Nature, Vol. 8, No. 3554, Feb. 2018. [I.F. 4.2], [Link]

7.

H. Abid, F. Ahmad*, S.-Y. Lee, H. Park, D. Im, I. Ahmed, and S. U. Chaudhary*, "An fMRI Investigation of Visual Hallucination in Human Visual Cortex", Behavioral and Brain Functions, Vol. 12, Issue 21, Nov. 2016. [I.F. 2.2], [Link]
 

* Editor's choice as a "Featured Article" for the issue

6.

S. Hamera*, Y. Yan, X. Song, S. U. Chaudhary, I. Murtaza, L. Su, M. Tariq, X. Chen*, and R. Fang*, "Expression of Cucumber mosaic virus suppressor 2b alters FWA methylation and its siRNA accumulation in Arabidopsis thaliana", Biology Open, Vol. 5, pp. 1727-1734, Sep. 2016. [I.F. 2.1], [Link]

5.

F. Ahmad*, A. Hussain, S. U. Chaudhary, I. Ahmad, S. M. Ramay,  "A Novel  Method for  Detection of Voxels for Decision Making: an fMRI Study",  International Journal of Imaging Systems and Technology, Vol. 26, Issue. 2, Jun. 2016. [I.F. 1.4], [Link]

4.

M. Ahmed, S. U. Chaudhary, A. J. Afzal*, and M. Tariq*, "Starvation-Induced Dietary Behaviour in Drosophila Melanogaster Larvae and Adults", Scientific Reports - Nature, Vol. 5, No. 14285, Sep. 2015. [I.F. 5.2], [Link]

3. 

F. Ahmad, S. U. Chaudhary, S. Kim, and H. Park*, "A Slice-wise Latent Structure Regression Method for Analysis of Functional Magnetic Resonance Imaging Data", Concepts in Magnetic Resonance Part A, Vol. 42, Issue 4, pp. 130-139, ISSN 1552-5023, Aug. 2013. [I.F. 1.1], [Link]

2.

S. U. Chaudhary, S.-Y. Shin, D. W. Lee, J.-H. Song and K.-H. Cho*, "ELECANS-An Integrated Model Development Environment for Multiscale Cancer Systems Biology", Bioinformatics, Vol. 29, Issue 7, pp. 957-959, ISSN 1460-2059(Online),1367-4803(Print), Apr. 2013. [I.F. 5.3], [Link]
 

* Paper also selected and featured in the World Biomedical Frontiers (ISSN: 2328-0166) due to its potentially significant impact in biomedical and cancer research. [Link]

For videos, please click: [ELECANS Videos]

1.

S. U. Chaudhary, S.-Y. Shin, J.-K. Won, and K.-H. Cho*, "Multi-Scale Modeling of Tumorigenesis Induced by Mitochondrial Incapacitation in Cell Death", IEEE Transactions on Biomedical Engineering, Vol. 58, Issue 10, pp. 3028-3032, ISSN 0018-9294, Oct. 2011. [I.F. 4.28], [Link]
 

* Paper appeared in the "Special Issue" on “Multi-Scale Modeling and Analysis in Computational Biology and Medicine".

1. 

K . H. Kwon, S. U. Chaudhary, M. H. Hur, S. H. Kim, H. S. Kim, and J. S. Yoo*, "Database Search Analysis using Flipped Mass Spectrum in Top-down Proteomics", Molecular and Cellular Proteomics,  Vol. HUPO2007, pp. 38, Oct. 2007. [I.F. 8.83]