23.

M. N. Gondal, A. Rehman, A Arif, M. U. Sultan, H. A. Awan, Z. Arshad, M. F. A. Chaudhary, W. Ahmed, R Hussain, H. Khawar, S. Khan, B. Amina, R. N. Butt, F. Abbas, M. N. Jami, R. Akbar, Z. Nasir, O. S. Shah, H. Hameed, M. F. A. Butt, M. M. Ahmad, M. A. Talal, S. Ahmed, F. Ahmed, O. Ishaq, S. W. Nabi, W. Vanderbauwhede, B. Wajid, H. Shehwana, E. Uddin, M. Safdar, I. Javed, M. Tariq, A. Faisal, and S. U. Chaudhary,* "TISON: a Next-generation Multi-scale Modeling Theatre for in silico Systems Oncology", Molecular Systems Biology. (In Preparation)

22.

A. Ambreen, A. Tahir, et al., "Biomarkers for Monitoring Response to Treatment in EPTB", Scientific Reports - Nature. (In Preparation)

21.

N. Javaid, Q. Sultana, K. Rasool, S. Gandra, F. Ahmad, S. U. Chaudhary*, S. Mirza*, "Trends in Antimicrobial Resistance Amongst Invasive Pathogens in Pakistan (2011-2015): A Retrospective Cross-Sectional Study". (In Preparation) 

Preprint: [ResearchSquare] 

20.

M. N. Gondal, R. N. Butt, O. S. Shah, Z. Nasir, H. Khawar, M. Tariq, A. Faisal, and S. U. Chaudhary*, "A Pharmacogenomics-based Approach to Design Personalized Therapeutics for Colorectal Tumorigenesis using an In silico Drosophila Patient Model". (In Preparation) 

Preprint: [BiorXiv]

19.

M. U. Ashraf, H. M. Salman, M. F. Khalid, M. H. F. Khan, S. Anwar, S. Afzal, I. Khan, S. U. Chaudhary*, "CRISPR-Cas13a Mediated Targeting of Hepatitis C Virus Internal-Ribosomal Entry Site (IRES) as an Effective Antiviral Strategy", Viruses (MDPI). (In Review)

18.

A. Zeb, R. Ullah*, and S. U. Chaudhary, "Movies become Search Good: Distribution of Emotions in Online Movie Reviews", Electronic Commerce Research. (In Review) 

17.

M. Samar, A. A. Shami, H. Mukhtar, M. W. Mumtaz, A. Tahir, S. Shahzad-ul-Hussan, S. U. Chaudhary, M. T. Akhtar*, "1H-NMR-based metabolomics: An integrated approach of metabolite profiling for the detection of the adulteration in chicken, mutton, beef, and donkey meat", Food Research International. (In Review)

16.

A. Tahir^♰, P. J. Martinez^♰, F. Ahmad, S. P. Fisher-Hoch, S. Mirza*, S. U. Chaudhary*, "An Evaluation of Lipid Profile and Pro-inflammatory Cytokines as Determinants of Cardiovascular Disease in Diabetics", Scientific Reports - Nature. (In Review)

15.

F. Ahmad, Z. Saghir, S. U. Chaudhary*, S. Bashir*, "Causality Mapping in Schizophrenia Patients using Resting-State fMRI Reveals Aberrant Functional and Causal Connectivity in the Brain",  Brain Connectivity. (In Review)

Preprint: [BiorXiv]

14.

G. Khurshid, A. Z. Abbassi, M. F. Khalid, M. N. Gondal, T. A. Naqvi, M. M. Shah, S. U. Chaudhary*, R. Ahmad*, "An integrated model of cyanobacterial decarboxylation and C3 photosynthetic pathways to bypass photorespiration for enhancing photosynthesis", Scientific Reports - Nature, Vol. 10, No., Nov. 2020. [I.F. 4.0], [Link]

13. 

A. R. Basharat, K. Iman, Z. Bibi, R. Hussain, H. G. Kabir, A. Shahid, M. Humayun, H. A. Hayat, M. Mustafa, M. Shoaib, Z. Ullah, S. Zarina, S. Ahmed, E. Uddin, S. Hamera,  F. Ahmad, S. U. Chaudhary*, "SPECTRUM - A MATLAB Toolbox for Identifying Proteins from Top-down Proteomics Data", Scientific Reports - Nature, Vol. 9, No. 11267, Jun. 2019. [I.F. 4.1], [Link]

12.

M. U. Ashraf♱, K. Iman♱, M. F. Khalid, H. M. Salman, T. Shafi, M. Rafi, N. Javaid, R. Hussain, F. Ahmad, S. Shahzad-ul-Hussan, S. Mirza, M. Shafiq, S. Afzal, M. Idrees, S. Hamera, S. Anwar, R. Qazi, S. A. Qureshi, S. U. Chaudhary*, "Evolution of Efficacious Pan-Genotypic HCV Therapies", Medicinal Research Reviews, Vol. 39, Issue 3, pp. 1091-1136 , May 2019. [I.F. 9.8] [Link]

11.

A. Ahsan; A. Z. Khan; H. Javed; S. Mirza; S. U. Chaudhary, S. Shahzad-ul-Hussan*, "Estimation of hepatitis C prevalence in the Punjab province of Pakistan: A retrospective study on general population", PLOS One,  Apr. 2019. [I.F. 2.8] [Link]

10.

N. Nisar*, K. Cheema, G. Powell, M. Bennett, S. U. Chaudhary, R. Qadri, Y. Yang, M. Azam, J. Rossiter, "Reduced metabolites of nitroaromatics are distributed in the environment via the food chain", Journal of Hazardous Materials, Vol. 355, pp. 170-179 , Aug. 2018, [I.F. 7.6] [Link]

9.

O. S. Shah, M. F. A. Chaudhary, H. A. Awan, F. Fatima, Z. Arshad, A. Bibi, M. Ahmed, H. Hameed, M. Furqan, S. Khalid, A. Faisal, S. U. Chaudhary*, "ATLANTIS-Attractor Landscape Analysis Toolbox for Cell Fate Discovery & Reprogramming", Scientific Reports - Nature, Vol. 8, No. 3554, Feb. 2018. [I.F. 4.2], [Link]

8.

H. Abid, F. Ahmad*, S.-Y. Lee, H. Park, D. Im, I. Ahmed, and S. U. Chaudhary*, "An fMRI Investigation of Visual Hallucination in Human Visual Cortex", Behavioral and Brain Functions, Vol. 12, Issue 21, Nov. 2016. [I.F. 2.2], [Link]
 

* Editor's choice as a "Featured Article" for the issue

7.

S. Hamera*, Y. Yan, X. Song, S. U. Chaudhary, I. Murtaza, L. Su, M. Tariq, X. Chen*, and R. Fang*, "Expression of Cucumber mosaic virus suppressor 2b alters FWA methylation and its siRNA accumulation in Arabidopsis thaliana", Biology Open, Vol. 5, pp. 1727-1734, Sep. 2016. [I.F. 2.1], [Link]

6.

F. Ahmad*, A. Hussain, S. U. Chaudhary, I. Ahmad, S. M. Ramay,  "A Novel  Method for  Detection of Voxels for Decision Making: an fMRI Study",  International Journal of Imaging Systems and Technology, Vol. 26, Issue. 2, Jun. 2016. [I.F. 1.4], [Link]

5.

M. Ahmed, S. U. Chaudhary, A. J. Afzal*, and M. Tariq*, "Starvation-Induced Dietary Behaviour in Drosophila Melanogaster Larvae and Adults", Scientific Reports - Nature, Vol. 5, No. 14285, Sep. 2015. [I.F. 5.2], [Link]

4. 

F. Ahmad, S. U. Chaudhary, S. Kim, and H. Park*, "A Slice-wise Latent Structure Regression Method for Analysis of Functional Magnetic Resonance Imaging Data", Concepts in Magnetic Resonance Part A, Vol. 42, Issue 4, pp. 130-139, ISSN 1552-5023, Aug. 2013. [I.F. 1.1], [Link]

3.

S. U. Chaudhary, S.-Y. Shin, D. W. Lee, J.-H. Song and K.-H. Cho*, "ELECANS-An Integrated Model Development Environment for Multiscale Cancer Systems Biology", Bioinformatics, Vol. 29, Issue 7, pp. 957-959, ISSN 1460-2059(Online),1367-4803(Print), Apr. 2013. [I.F. 5.3], [Link]
 

* Paper also selected and featured in the World Biomedical Frontiers (ISSN: 2328-0166) due to its potentially significant impact in biomedical and cancer research. [Link]

For videos, please click: [ELECANS Videos]

2.

S. U. Chaudhary, S.-Y. Shin, J.-K. Won, and K.-H. Cho*, "Multi-Scale Modeling of Tumorigenesis Induced by Mitochondrial Incapacitation in Cell Death", IEEE Transactions on Biomedical Engineering, Vol. 58, Issue 10, pp. 3028-3032, ISSN 0018-9294, Oct. 2011. [I.F. 4.28], [Link]
 

* Paper appeared in the "Special Issue" on “Multi-Scale Modeling and Analysis in Computational Biology and Medicine".

1.

K . H. Kwon, S. U. Chaudhary, M. H. Hur, S. H. Kim, H. S. Kim, and J. S. Yoo*, "Database Search Analysis using Flipped Mass Spectrum in Top-down Proteomics", Molecular and Cellular Proteomics,  Vol. HUPO2007, pp. 38, Oct. 2007. [I.F. 8.83]